It looks like this has something to do with APIC but I am not sure. I have similar CPUs with a different MB and BIOS that work fine on the same type of kernel. A lot of time the issue is because of the C-step setting in the BIOS.
The same thing happened on the 2.6 kernel with Centos 6 but this is a homebrew 4.4 kernel soI am not sure why it is happening when even Centos 7 (3.2) kernel works OK.
Solution - It comes down to the BIOS set........