You'll have to violate the iso9660 standards but it is necessary if you want to preserve your filesystem and filenames and shouldn't be an issue as long as you are using a modern OS like Linux.
genisoimage -o Backup-Myfiles.iso -r -J -joliet-long /some/path/
You will get errors like below (even enabling joliet-long didn't help)
genisoimage: Error: /some/filename.pdf have the same Joliet name
Joliet tree sort failed. The -joliet-lo........
Essentially a program I was running for mining did not terminate properly with Ctrl+C it is listed as defunct and cannot be killed, kernel is tainted and normal tricks to disable the port are impossible the dev and sys entries for the device cannot be browsed or interacted with in any form without a lockup of the request. The only solution is to reboot due to the kernel taint as far as I can find so far.
[1130246.811056] INFO: task minerd:21861 blocked for more th........